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    yahB putative LysR-type DNA-binding transcriptional regulator YahB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945278, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yahB
    Official Full Name
    putative LysR-type DNA-binding transcriptional regulator YahB
    Primary source
    ECOCYC:G6181
    Locus tag
    b0316
    See related
    ASAP:ABE-0001088
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0314
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    Genomic context

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    Sequence:
    NC_000913.3 (333501..334433, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YahV Neighboring gene DNA-binding transcriptional regulator/c-di-GMP phosphodiesterase PdeL Neighboring gene uncharacterized protein YahC Neighboring gene ankyrin repeat-containing protein YahD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    2. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative LysR-type DNA-binding transcriptional regulator YahB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      333501..334433 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414850.1 putative LysR-type DNA-binding transcriptional regulator YahB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414850.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2H4TPX8
      Conserved Domains (1) summary
      PRK10094
      Location:5 → 293
      PRK10094; HTH-type transcriptional activator AllS
    Nucleotide Protein
    Heading Accession and Version

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