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    essD putative phage lysis protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947545, updated on 3-Dec-2024

    Summary

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    Official Symbol
    essD
    Official Full Name
    putative phage lysis protein
    Primary source
    ECOCYC:G6309
    Locus tag
    b0554
    See related
    ASAP:ABE-0001895
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0545; vlyS; ybcR
    Summary
    EssD is a predicted class II holin of the cryptic lambdoid prophage DLP12. [More information is available at EcoCyc: G6309].
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    Genomic context

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    Sequence:
    NC_000913.3 (577398..577613)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene prophage antitermination protein Q homolog QuuD Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene lysozyme Neighboring gene putative prophage endopeptidase RzpD Neighboring gene putative prophage lysis lipoprotein RzoD Neighboring gene prophage lipoprotein BorD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Subclassification and targeted characterization of prophage-encoded two-component cell lysis cassette. Srividhya KV, et al. J Biosci, 2007 Aug. PMID 17914239
    2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables pore-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in killing of cells of another organism IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in symbiont-mediated killing of host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within viral release from host cell by cytolysis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative phage lysis protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      577398..577613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415086.1 putative phage lysis protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415086.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1IYB1
      Conserved Domains (1) summary
      pfam04971
      Location:5 → 68
      Phage_holin_2_1; Bacteriophage P21 holin S
    Nucleotide Protein
    Heading Accession and Version

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