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    ygjV inner membrane protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947604, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ygjV
    Official Full Name
    inner membrane protein
    Primary source
    ECOCYC:G7608
    Locus tag
    b3090
    See related
    ASAP:ABE-0010161
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3081
    Summary
    [More information is available at EcoGene: EG12733]. Protein topology in the inner membrane has been determined . [More information is available at EcoCyc: G7608].
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    Genomic context

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    Sequence:
    NC_000913.3 (3241193..3241744, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative membrane-bound redox modulator Alx Neighboring gene serine/threonine:Na(+) symporter Neighboring gene D-altronate dehydratase Neighboring gene D-glucoronate/D-galacturonate isomerase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    2. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
    3. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article
    4. Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis. Drew D, et al. Proc Natl Acad Sci U S A, 2002 Mar 5. PMID 11867724, Free PMC Article
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    inner membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3241193..3241744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417561.1 inner membrane protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417561.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376LBL5
      Conserved Domains (1) summary
      pfam10688
      Location:5 → 159
      Imp-YgjV; Bacterial inner membrane protein
    Nucleotide Protein
    Heading Accession and Version

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