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    ychA transglutaminase-like/TPR repeat-containing protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945784, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ychA
    Official Full Name
    transglutaminase-like/TPR repeat-containing protein
    Primary source
    ECOCYC:EG11251
    Locus tag
    b1214
    See related
    ASAP:ABE-0004074
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1202; sirB1
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    Genomic context

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    Sequence:
    NC_000913.3 (1267320..1268129)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptide chain release factor RF1 Neighboring gene protein-(glutamine-N(5)) methyltransferase Neighboring gene SirB family protein YchQ Neighboring gene 3-deoxy-D-manno-octulosonate 8-phosphate synthase Neighboring gene small toxic polypeptide LdrA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map (supplement). Oshima T, et al. DNA Res, 1996 Jun 30. PMID 8905239
    2. The kdsA gene coding for 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase is part of an operon in Escherichia coli. Woisetschläger M, et al. Mol Gen Genet, 1987 May. PMID 3039295
    3. Cloning and sequencing of a previously unidentified gene that is involved in the biosynthesis of heme in Escherichia coli. Nakayashiki T, et al. Gene, 1995 Feb 3. PMID 7883187
    4. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    5. Expression of genes kdsA and kdsB involved in 3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide is growth phase regulated primarily at the transcriptional level in Escherichia coli K-12. Strohmaier H, et al. J Bacteriol, 1995 Aug. PMID 7543480, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transglutaminase-like/TPR repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1267320..1268129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415732.1 transglutaminase-like/TPR repeat-containing protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415732.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6Q4W7
      Conserved Domains (2) summary
      PRK10941
      Location:1 → 269
      PRK10941; tetratricopeptide repeat-containing protein
      sd00005
      Location:187 → 210
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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