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    yodD stress-induced protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946469, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yodD
    Official Full Name
    stress-induced protein
    Primary source
    ECOCYC:G7046
    Locus tag
    b1953
    See related
    ASAP:ABE-0006488
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1951
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    Genomic context

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    Sequence:
    NC_000913.3 (2024986..2025213)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional activator RcsA Neighboring gene protein DsrB Neighboring gene ncRNA Neighboring gene putative mannosyl-3-phosphoglycerate phosphatase Neighboring gene diguanylate cyclase DgcQ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of stress-related proteins in Escherichia coli using the pollutant cis-dichloroethylene. Lee J, et al. J Appl Microbiol, 2010 Jun. PMID 19919618
    2. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to acidic pH IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to hydrogen peroxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation on inanimate substrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stress-induced protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2024986..2025213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416463.4 stress-induced protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416463.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3I5L7, A0A1X3J030, A0A1X3JGV1, A0A454A4W4, A0A829L6A7, A0AAN3MDF3, F4T0W4
      Conserved Domains (1) summary
      pfam10733
      Location:18 → 75
      DUF2525; Protein of unknown function (DUF2525)
    Nucleotide Protein
    Heading Accession and Version

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