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    ybcO putative nuclease YbcO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945147, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybcO
    Official Full Name
    putative nuclease YbcO
    Primary source
    ECOCYC:G6305
    Locus tag
    b0549
    See related
    ASAP:ABE-0001878
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0540
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    Genomic context

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    Sequence:
    NC_000913.3 (573084..573374)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator Neighboring gene uncharacterized protein YlcH Neighboring gene DNA base-flipping protein Neighboring gene NinE family prophage protein Neighboring gene crossover junction endodeoxyribonuclease RusA Neighboring gene uncharacterized protein YlcG Neighboring gene prophage antitermination protein Q homolog QuuD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82. Mahdi AA, et al. J Mol Biol, 1996 Apr 5. PMID 8648624
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    4. Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification. Liu F, et al. Nat Commun, 2017 May 19. PMID 28524877, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative nuclease YbcO

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      573084..573374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415081.1 putative nuclease YbcO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415081.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A444R6Z3
      Conserved Domains (1) summary
      pfam07102
      Location:2 → 92
      DUF1364; Protein of unknown function (DUF1364)
    Nucleotide Protein
    Heading Accession and Version

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