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    yqeI putative transcriptional regulator YqeI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947327, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yqeI
    Official Full Name
    putative transcriptional regulator YqeI
    Primary source
    ECOCYC:G7467
    Locus tag
    b2847
    See related
    ASAP:ABE-0009352
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2845
    Summary
    This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. [More information is available at EcoGene: EG13100]. yqeI is located within a remnant of an ETT2 (type III secretion system) pathogenicity island that is fully present in pathogenic strains such as Escherichia coli O157:H7 and at least partially present in most sequenced Escherichia coli and Shigella strains . [More information is available at EcoCyc: G7467].
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    Genomic context

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    Sequence:
    NC_000913.3 (2988502..2989311)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YqeG Neighboring gene putative LuxR family transcriptional regulator YqeH Neighboring gene protein YqeJ Neighboring gene uncharacterized protein YqeL Neighboring gene protein YqeK

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. Ren CP, et al. J Bacteriol, 2004 Jun. PMID 15150243, Free PMC Article
    2. A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis. Ideses D, et al. J Bacteriol, 2005 Dec. PMID 16291689, Free PMC Article
    3. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative transcriptional regulator YqeI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2988502..2989311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417324.1 putative transcriptional regulator YqeI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417324.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WZ08
      Conserved Domains (1) summary
      COG3710
      Location:1 → 149
      CadC1; DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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