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    LOC100131943 uncharacterized LOC100131943 [ Homo sapiens (human) ]

    Gene ID: 100131943, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100131943
    Gene description
    uncharacterized LOC100131943
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100131943 in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20055298..20056829)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20004009..20005873)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene A-kinase anchoring protein 10 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8302 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19881511-19882224 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19890363-19891159 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19896026-19896559 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19898031-19898532 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:19898533-19899032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19911474-19912041 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8304 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8303 Neighboring gene SPECC1 divergent transcript Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1 Neighboring gene Sharpr-MPRA regulatory region 5861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11865 Neighboring gene Sharpr-MPRA regulatory region 535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11867 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11868 Neighboring gene Sharpr-MPRA regulatory region 1687 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:20026257-20026482 Neighboring gene potassium channel tetramerization domain containing 9 pseudogene 1 Neighboring gene RNA, U6 small nuclear 258, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Clark HF, et al. Genome Res, 2003 Oct. PMID 12975309, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    General gene information

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    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      20055298..20056829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001753087.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      20004009..20005873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007087655.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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