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    ydbH putative phospholipid transport factor YdbH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945949, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydbH
    Official Full Name
    putative phospholipid transport factor YdbH
    Primary source
    ECOCYC:G6703
    Locus tag
    b1381
    See related
    ASAP:ABE-0004623
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1378
    Summary
    Sequence similarity suggests that YdbH is a member of the Autotransporter (AT) family . [More information is available at EcoCyc: G6703].
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    Genomic context

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    Sequence:
    NC_000913.3 (1443051..1445690)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF333 domain-containing protein YdbJ Neighboring gene lipoprotein implicated in Novobiocin resistance Neighboring gene D-lactate dehydrogenase Neighboring gene lipoprotein YnbE Neighboring gene DUF1318 domain-containing protein YdbL Neighboring gene DNA-binding transcriptional activator FeaR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of Escherichia coli. Kumar S, et al. Proc Natl Acad Sci U S A, 2024 May 21. PMID 38748582, Free PMC Article
    2. The ldhA gene encoding the fermentative lactate dehydrogenase of Escherichia coli. Bunch PK, et al. Microbiology (Reading), 1997 Jan. PMID 9025293
    3. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    4. YhdP, TamB, and YdbH Are Redundant but Essential for Growth and Lipid Homeostasis of the Gram-Negative Outer Membrane. Ruiz N, et al. mBio, 2021 Dec 21. PMID 34781743, Free PMC Article
    5. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of Escherichia coli.
      Title: YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of Escherichia coli.
    2. YhdP, TamB, and YdbH Are Redundant but Essential for Growth and Lipid Homeostasis of the Gram-Negative Outer Membrane.
      Title: YhdP, TamB, and YdbH Are Redundant but Essential for Growth and Lipid Homeostasis of the Gram-Negative Outer Membrane.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative phospholipid transport factor YdbH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1443051..1445690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415899.1 putative phospholipid transport factor YdbH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415899.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WT40
      Conserved Domains (1) summary
      PRK10695
      Location:24 → 862
      PRK10695; YdbH family protein
    Nucleotide Protein
    Heading Accession and Version

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