U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    digH divisome localized glycosyl hydrolase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945975, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    digH
    Official Full Name
    divisome localized glycosyl hydrolase
    Primary source
    ECOCYC:G6785
    Locus tag
    b1491
    See related
    ASAP:ABE-0004970
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1485; yddW
    Summary
    AFMB Structural Genomics target Number 106 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13794].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1567504..1568823, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene diguanylate cyclase DosC Neighboring gene protein YddY Neighboring gene L-glutamate:4-aminobutyrate antiporter Neighboring gene glutamate decarboxylase B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Tol-Pal system is required for peptidoglycan-cleaving enzymes to complete bacterial cell division. Yakhnina AA, et al. Proc Natl Acad Sci U S A, 2020 Mar 24. PMID 32152098, Free PMC Article
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    divisome localized glycosyl hydrolase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1567504..1568823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416008.1 divisome localized glycosyl hydrolase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416008.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A826J141
      Conserved Domains (1) summary
      COG1649
      Location:1 → 438
      YddW; Uncharacterized lipoprotein YddW, UPF0748 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.