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    cspI cold shock-like protein CspI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946099, updated on 3-Dec-2024

    Summary

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    Official Symbol
    cspI
    Official Full Name
    cold shock-like protein CspI
    Primary source
    ECOCYC:G6825
    Locus tag
    b1552
    See related
    ASAP:ABE-0005183
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    cspJ; ECK1546
    Summary
    CspI is a cold shock protein with complex regulation. [More information is available at EcoCyc: G6825].
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    Genomic context

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    Sequence:
    NC_000913.3 (1638455..1638667, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YnfR Neighboring gene protein YnfQ Neighboring gene DUF2514 domain-containing protein RzpQ Neighboring gene putative lipoprotein RzoQ Neighboring gene putative lysozyme Neighboring gene protein YdfR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CspI, the ninth member of the CspA family of Escherichia coli, is induced upon cold shock. Wang N, et al. J Bacteriol, 1999 Mar. PMID 10049393, Free PMC Article
    2. Applications of nucleic acid chaperone activity of CspA and its homologues. Phadtare S, et al. J Mol Microbiol Biotechnol, 2009. PMID 19556744
    3. Cold shock proteins aid coupling of transcription and translation in bacteria. El-Sharoud WM, et al. Sci Prog, 2007. PMID 17455763, Free PMC Article
    4. Folding chromosomes in bacteria: examining the role of Csp proteins and other small nucleic acid-binding proteins. Trun N, et al. Curr Top Dev Biol, 2003. PMID 12959196
    5. Changes in Escherichia coli transcriptome during acclimatization at low temperature. Polissi A, et al. Res Microbiol, 2003 Oct. PMID 14527658

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within response to cold IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cold shock-like protein CspI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1638455..1638667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416070.1 cold shock-like protein CspI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416070.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7I6H5L0
      Conserved Domains (1) summary
      cl09927
      Location:1 → 70
      S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
    Nucleotide Protein
    Heading Accession and Version

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