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    rrrQ putative lysozyme [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946100, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rrrQ
    Official Full Name
    putative lysozyme
    Primary source
    ECOCYC:G6827
    Locus tag
    b1554
    See related
    ASAP:ABE-0005189
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1548; ydfQ
    Summary
    ArrD(YbcS) and ArrQ(YdfQ) are distant homologs of the phage lambda lysozyme R protein, as evidenced by all three matching to the pfam00959 profile (E values for pfam00959 hits using NCBI Conserved Domain (CD) Search: [More information is available at EcoGene: EG13829].
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    Genomic context

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    Sequence:
    NC_000913.3 (1639524..1640057, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cold shock-like protein CspI Neighboring gene DUF2514 domain-containing protein RzpQ Neighboring gene putative lipoprotein RzoQ Neighboring gene protein YdfR Neighboring gene putative prophage lysis protein EssQ Neighboring gene putative zinc-binding protein YnfU

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lysozyme activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables lysozyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in killing of cells of another organism IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative lysozyme

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1639524..1640057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416072.1 putative lysozyme [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416072.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376S6X9
      Conserved Domains (1) summary
      COG3772
      Location:17 → 176
      RrrD; Phage-related lysozyme (muramidase), GH24 family [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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