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    yhjB putative DNA-binding transcriptional regulator YhjB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948036, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yhjB
    Official Full Name
    putative DNA-binding transcriptional regulator YhjB
    Primary source
    ECOCYC:EG12246
    Locus tag
    b3520
    See related
    ASAP:ABE-0011499
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3505
    Summary
    YhjB belongs to the NarL family of response regulators of two-component regulatory systems; no cognate histidine kinase has been identified. [More information is available at EcoCyc: EG12246].
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    Genomic context

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    Sequence:
    NC_000913.3 (3671292..3671894, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cytochrome c peroxidase Neighboring gene cytoplasmic trehalase Neighboring gene putative DNA-binding transcriptional regulator YhjC Neighboring gene putative transporter YhjD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli. Reichenbach B, et al. Nucleic Acids Res, 2008 May. PMID 18334534, Free PMC Article
    2. Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays. Winterberg KM, et al. Appl Environ Microbiol, 2005 Jan. PMID 15640221, Free PMC Article
    3. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    4. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article
    5. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YhjB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3671292..3671894 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417977.1 putative DNA-binding transcriptional regulator YhjB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417977.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5YFI1
      Conserved Domains (1) summary
      COG2197
      Location:1 → 195
      CitB; DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]
    Nucleotide Protein
    Heading Accession and Version

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