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    ydjZ DedA family protein YdjZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946269, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydjZ
    Official Full Name
    DedA family protein YdjZ
    Primary source
    ECOCYC:G6947
    Locus tag
    b1752
    See related
    ASAP:ABE-0005837
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1750
    Summary
    YdjZ is a member of the DedA family of proteins and is predicted to contain multiple transmembrane regions . [More information is available at EcoCyc: G6947].
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    Genomic context

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    Sequence:
    NC_000913.3 (1834808..1835515)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DedA family protein YdjX Neighboring gene 4Fe-4S ferredoxin-type domain-containing protein YdjY Neighboring gene AhpD-like domain-containing protein YnjA Neighboring gene putative ABC transporter periplasmic binding protein YnjB Neighboring gene putative ABC transporter membrane subunit YnjC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate. Henne A, et al. Appl Environ Microbiol, 1999 Sep. PMID 10473393, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
    4. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DedA family protein YdjZ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1834808..1835515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416266.1 DedA family protein YdjZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416266.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0E2LID5, A0A0H3EI46, A0A2I5SP58, A0A2X6R735, A0A376RIV4, A0A776AFZ8, S1PJZ3
      Conserved Domains (1) summary
      COG0398
      Location:15 → 235
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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