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    col-34 Cuticle collagen 34 [ Caenorhabditis elegans ]

    Gene ID: 177188, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-34
    Official Full Name
    Cuticle collagen 34
    Primary source
    WormBase:WBGene00000611
    Locus tag
    CELE_F36A4.10
    See related
    AllianceGenome:WB:WBGene00000611
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-34 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (4243545..4244610, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Transthyretin-like family protein Neighboring gene DNA-directed RNA polymerase II subunit RPB1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of ram-5 in the structural cell is required for sensory ray morphogenesis in Caenorhabditis elegans male tail. Yu RY, et al. EMBO J, 2000 Jul 17. PMID 10899109, Free PMC Article
    2. Mutations with sensory ray defect unmask cuticular glycoprotein antigens in Caenorhabditis elegans male tail. Ko FC, et al. Dev Growth Differ, 2000 Feb. PMID 10831045
    3. dpy-13: a nematode collagen gene that affects body shape. von Mende N, et al. Cell, 1988 Nov 18. PMID 2846184
    4. Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes, and their deduced collagen products. Bird DM. Gene, 1992 Oct 21. PMID 1398138
    5. The cuticle of the nematode Caenorhabditis elegans: a complex collagen structure. Johnstone IL. Bioessays, 1994 Mar. PMID 8166670

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of cuticle NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen and cuticulin-based cuticle development NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region NAS
    Non-traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Cuticle collagen 34
    NP_500520.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      4243545..4244610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068119.6 → NP_500520.1  Cuticle collagen 34 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500520.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P34687, Q20087
      Conserved Domains (1) summary
      smart01088
      Location:12 → 64
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P34687.2

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