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    rpl-27A Large ribosomal subunit protein uL15 [ Caenorhabditis elegans ]

    Gene ID: 171767, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rpl-27A
    Official Full Name
    Large ribosomal subunit protein uL15
    Primary source
    WormBase:WBGene00021350
    Locus tag
    CELE_Y37E3.8
    See related
    AllianceGenome:WB:WBGene00021350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in germ line and somatic cell. Orthologous to human RPL27A (ribosomal protein L27a). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rpl-27A in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (2069681..2070607, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 13B Neighboring gene ncRNA Neighboring gene Large ribosomal subunit protein P1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Mitochondrial prohibitin complex protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NatB domain-containing CRA-1 antagonizes hydrolase ACER-1 linking acetyl-CoA metabolism to the initiation of recombination during C. elegans meiosis. Gao J, et al. PLoS Genet, 2015 Mar. PMID 25768301, Free PMC Article
    2. Roles for the RNA polymerase III regulator MAFR-1 in regulating sperm quality in Caenorhabditis elegans. Hammerquist AM, et al. Sci Rep, 2020 Nov 9. PMID 33168938, Free PMC Article
    3. β-Integrin de-phosphorylation by the Density-Enhanced Phosphatase DEP-1 attenuates EGFR signaling in C. elegans. Walser M, et al. PLoS Genet, 2017 Jan. PMID 28135265, Free PMC Article
    4. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. Kolundzic E, et al. Dev Cell, 2018 Sep 10. PMID 30078731, Free PMC Article
    5. Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal. Zinovyeva AY, et al. Proc Natl Acad Sci U S A, 2015 Sep 22. PMID 26351692, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Large ribosomal subunit protein uL15
    NP_001368000.1
    • Confirmed by transcript evidence
    NP_490927.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2069681..2070607 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058526.10 → NP_490927.1  Large ribosomal subunit protein uL15 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490927.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BKU5
      Conserved Domains (1) summary
      PTZ00160
      Location:1 → 145
      PTZ00160; 60S ribosomal protein L27a; Provisional

    2. NM_001381333.1 → NP_001368000.1  Large ribosomal subunit protein uL15 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BKU6
      Conserved Domains (1) summary
      cl12022
      Location:1 → 88
      Ribosomal_L27A; Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
    Nucleotide Protein
    Heading Accession and Version

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