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    ssna-1 Sjogren's Syndrome Nuclear Autoantigen [ Caenorhabditis elegans ]

    Gene ID: 176861, updated on 28-Oct-2024

    Summary

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    Official Symbol
    ssna-1
    Official Full Name
    Sjogren's Syndrome Nuclear Autoantigen
    Primary source
    WormBase:WBGene00020300
    Locus tag
    CELE_T07A9.13
    See related
    AllianceGenome:WB:WBGene00020300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See ssna-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (388084..388716)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Small ribosomal subunit protein eS24 Neighboring gene Small ribosomal subunit protein eS24 Neighboring gene Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial Neighboring gene Syntaxin-binding protein 1 Neighboring gene Cytochrome c oxidase assembly protein COX14 Neighboring gene Nucleolar GTP-binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    Sjogren's Syndrome Nuclear Autoantigen
    NP_001023361.2
    • Confirmed by transcript evidence;
      Product from WormBase gene class ssna
    NP_001023362.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class ssna

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      388084..388716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001028191.9 → NP_001023362.1  Sjogren's Syndrome Nuclear Autoantigen [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023362.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5F4U5
      Conserved Domains (1) summary
      TIGR02168
      Location:9 → 91
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001028190.4 → NP_001023361.2  Sjogren's Syndrome Nuclear Autoantigen [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023361.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95X71
    Nucleotide Protein
    Heading Accession and Version

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