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    tbb-6 Tubulin beta chain [ Caenorhabditis elegans ]

    Gene ID: 179680, updated on 9-Dec-2024

    Summary

    Official Symbol
    tbb-6
    Official Full Name
    Tubulin beta chain
    Primary source
    WormBase:WBGene00006539
    Locus tag
    CELE_T04H1.9
    See related
    AllianceGenome:WB:WBGene00006539
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in PERK-mediated unfolded protein response. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in pharynx. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 1 and congenital fibrosis of the extraocular muscles 3A. Orthologous to several human genes including TUBB3 (tubulin beta 3 class III); TUBB6 (tubulin beta 6 class V); and TUBB8 (tubulin beta 8 class VIII). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See tbb-6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (12261531..12263368)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Activin_recp domain-containing protein Neighboring gene Putative UDP-glucuronosyltransferase ugt-55 Neighboring gene Putative UDP-glucuronosyltransferase ugt-56 Neighboring gene MSP domain-containing protein Neighboring gene pseudo

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in PERK-mediated unfolded protein response HEP PubMed 
    involved_in microtubule cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mitotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Tubulin beta chain
    NP_506075.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      12261531..12263368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073674.4NP_506075.2  Tubulin beta chain [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506075.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EF01
      Conserved Domains (2) summary
      PTZ00010
      Location:1421
      PTZ00010; tubulin beta chain; Provisional
      cd02187
      Location:2421
      beta_tubulin; The beta-tubulin family