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    svop-1 Putative transporter svop-1 [ Caenorhabditis elegans ]

    Gene ID: 176250, updated on 9-Dec-2024

    Summary

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    Official Symbol
    svop-1
    Official Full Name
    Putative transporter svop-1
    Primary source
    WormBase:WBGene00014021
    Locus tag
    CELE_ZK637.1
    See related
    AllianceGenome:WB:WBGene00014021
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Orthologous to human SVOP (SV2 related protein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See svop-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    10
    Sequence:
    Chromosome: III; NC_003281.10 (8882707..8885482, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene FAM161 homolog famh-136 Neighboring gene putative RING finger protein ZK637.14 Neighboring gene Protein linkin Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bioinformatic identification of cytochrome b5 homologues from the parasitic nematode Ascaris suum and the free-living nematode Caenorhabditis elegans highlights the crucial role of A. suum adult-specific secretory cytochrome b₅ in parasitic adaptation. Takamiya S, et al. Parasitol Int, 2016 Apr. PMID 26571414
    2. Computational evidence support the hypothesis of neuroglobin also acting as an electron transfer species. Paltrinieri L, et al. J Biol Inorg Chem, 2017 Jun. PMID 28378164
    3. A redox signalling globin is essential for reproduction in Caenorhabditis elegans. De Henau S, et al. Nat Commun, 2015 Dec 1. PMID 26621324, Free PMC Article
    4. A globin domain in a neuronal transmembrane receptor of Caenorhabditis elegans and Ascaris suum: molecular modeling and functional properties. Tilleman L, et al. J Biol Chem, 2015 Apr 17. PMID 25666609, Free PMC Article
    5. Dysregulated mir-76 mediated a protective response to nanopolystyrene by modulating heme homeostasis related molecular signaling in nematode Caenorhabditis elegans. Liu H, et al. Ecotoxicol Environ Saf, 2021 Apr 1. PMID 33550076

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative transporter svop-1
    NP_498960.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      8882707..8885482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066559.8 → NP_498960.2  Putative transporter svop-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498960.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P30638, Q21101
      Conserved Domains (2) summary
      cd06174
      Location:87 → 508
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      TIGR00898
      Location:16 → 514
      2A0119; cation transport protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P30638.5

    Gene LinkOut

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