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    ydgI putative arginine:ornithine antiporter [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945159, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydgI
    Official Full Name
    putative arginine:ornithine antiporter
    Primary source
    ECOCYC:G6861
    Locus tag
    b1605
    See related
    ASAP:ABE-0005362
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    arcD; ECK1600
    Summary
    ArcD is an uncharacterized member of the APC family of amino acid transporters. arcD is similar to the arcD gene of Pseudomonas aeruginosa wich encodes an arginine:ornithine antiporter . [More information is available at EcoCyc: G6861].
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    Genomic context

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    Sequence:
    NC_000913.3 (1679557..1680939)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pyridine nucleotide transhydrogenase subunit alpha Neighboring gene DUF1471 domain-containing protein YdgH Neighboring gene dihydromonapterin reductase Neighboring gene GlpM family protein Neighboring gene DNA-binding transcriptional regulator RstA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    3. YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport. Herzberg M, et al. J Bacteriol, 2006 Jan. PMID 16385049, Free PMC Article
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative arginine:ornithine antiporter

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1679557..1680939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416122.1 putative arginine:ornithine antiporter [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416122.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2G8J7
      Conserved Domains (1) summary
      TIGR00905
      Location:3 → 460
      2A0302; transporter, basic amino acid/polyamine antiporter (APA) family
    Nucleotide Protein
    Heading Accession and Version

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