rig-1 neuRonal IGCAM [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: rig-1
Official Full Name: neuRonal IGCAM
Primary source: WormBase:WBGene00004369
Locus tag: CELE_K09E2.4
See related: AllianceGenome:WB:WBGene00004369
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules and synapse assembly. Predicted to be located in membrane. Predicted to be active in synapse. Is expressed in head ganglion; hypodermis; interneuron; and pharyngeal muscle cell. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See rig-1 in Genome Data Viewer

Location:: chromosome: X

Exon count:: 18

Sequence:: Chromosome: X; NC_003284.9 (8660619..8671822)

Chromosome X - NC_003284.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

K09E2.4 (e-PCR)
- UniSTS:312408

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Process	Evidence Code	Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IBA Inferred from Biological aspect of Ancestor more info
involved_in synapse assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in system development	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in synapse	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: neuRonal IGCAM

NP_001362001.1

Product from WormBase gene class rig;
Confirmed by transcript evidence

NP_001379871.1

Product from WormBase gene class rig;
Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003284.9 Reference assembly

Range

8660619..8671822

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001375088.2 → NP_001362001.1 neuRonal IGCAM [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

H2KZQ5

Conserved Domains (3) summary

smart00408
Location:273 → 333

IGc2; Immunoglobulin C-2 Type

smart00409
Location:475 → 555

IG; Immunoglobulin

cd00063
Location:685 → 779

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
NM_001392813.1 → NP_001379871.1 neuRonal IGCAM [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q7Z2A2