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    lotr-1 HTH OST-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172638, updated on 18-Sep-2024

    Summary

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    Official Symbol
    lotr-1
    Official Full Name
    HTH OST-type domain-containing protein
    Primary source
    WormBase:WBGene00008385
    Locus tag
    CELE_D1081.7
    See related
    AllianceGenome:WB:WBGene00008385
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See lotr-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    10
    Sequence:
    Chromosome: I; NC_003279.8 (8487618..8490938)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Snake toxin/toxin-like domain-containing protein Neighboring gene Carn_acyltransf domain-containing protein Neighboring gene Zip homologous protein 2 Neighboring gene Cell division cycle 5-like protein Neighboring gene Homeobox protein ceh-6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline. Marnik EA, et al. PLoS Genet, 2022 Jun. PMID 35657999, Free PMC Article
    2. A snapshot of the physical and functional wiring of the Eps15 homology domain network in the nematode. Tsushima H, et al. PLoS One, 2013. PMID 23424658, Free PMC Article
    3. LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans. Tsukamoto T, et al. Genetics, 2017 Aug. PMID 28576864, Free PMC Article
    4. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
    5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline.
      Title: The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    HTH OST-type domain-containing protein
    NP_001122438.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      8487618..8490938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001128966.4 → NP_001122438.1  HTH OST-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122438.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5Z2T6
      Conserved Domains (1) summary
      cl14879
      Location:40 → 126
      LabA_like_C; C-terminal domain of LabA_like proteins
    Nucleotide Protein
    Heading Accession and Version

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