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    Y43C5A.3 FIP (Fungus-Induced Protein) Related [ Caenorhabditis elegans ]

    Gene ID: 189848, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y43C5A.3
    Official Full Name
    FIP (Fungus-Induced Protein) Related
    Primary source
    WormBase:WBGene00012783
    Locus tag
    CELE_Y43C5A.3
    See related
    AllianceGenome:WB:WBGene00012783
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables double-stranded DNA binding activity. Involved in defense response to Gram-negative bacterium and killing of cells of another organism. Is expressed in hypodermis and ventral cord blast cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y43C5A.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    2
    Sequence:
    Chromosome: IV; NC_003282.8 (10274036..10275411)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Fibrinogen C-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene CaeNaCin (Caenorhabditis bacteriocin)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nematode Peptides with Host-Directed Anti-inflammatory Activity Rescue Caenorhabditis elegans from a Burkholderia pseudomallei Infection. Lim MP, et al. Front Microbiol, 2016. PMID 27672387, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to Gram-negative bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in killing of cells of another organism IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FIP (Fungus-Induced Protein) Related
    NP_501884.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10274036..10275411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069483.7 → NP_501884.1  FIP (Fungus-Induced Protein) Related [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501884.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XXF1
    Nucleotide Protein
    Heading Accession and Version

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