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    H40L08.1 UBX domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181603, updated on 9-Dec-2024

    Summary

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    Official Symbol
    H40L08.1
    Official Full Name
    UBX domain-containing protein
    Primary source
    WormBase:WBGene00010433
    Locus tag
    CELE_H40L08.1
    See related
    AllianceGenome:WB:WBGene00010433
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ubiquitin binding activity. Orthologous to human FAF2 (Fas associated factor family member 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See H40L08.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Sequence:
    Chromosome: X; NC_003284.9 (15080779..15084086, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Ovule protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Low-density lipoprotein receptor-related protein 2 Neighboring gene Serine/threonine-protein kinase flr-4 Neighboring gene Movement protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    UBX domain-containing protein
    NP_510506.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      15080779..15084086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078105.5 → NP_510506.1  UBX domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510506.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45628
      Conserved Domains (3) summary
      pfam04795
      Location:274 → 359
      PAPA-1; PAPA-1-like conserved region
      pfam14555
      Location:9 → 43
      UBA_4; UBA-like domain
      cl00155
      Location:352 → 398
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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