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    snpc-1.3 SNAPc (Small Nuclear RNA Activating Complex) homolog [ Caenorhabditis elegans ]

    Gene ID: 178929, updated on 9-Dec-2024

    Summary

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    Official Symbol
    snpc-1.3
    Official Full Name
    SNAPc (Small Nuclear RNA Activating Complex) homolog
    Primary source
    WormBase:WBGene00017265
    Locus tag
    CELE_F08F3.9
    See related
    AllianceGenome:WB:WBGene00017265
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Is expressed in gonad; metacorpus; nerve ring; and terminal bulb. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See snpc-1.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_003283.11 (5437084..5439168, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ammonium transporter AmtB-like domain-containing protein Neighboring gene WSN domain-containing protein Neighboring gene Phospholipid/glycerol acyltransferase domain-containing protein;putative glycerol-3-phosphate acyltransferase, mitochondrial Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans. Choi CP, et al. Elife, 2021 Feb 15. PMID 33587037, Free PMC Article
    2. Inducible degradation of dosage compensation protein DPY-27 facilitates isolation of Caenorhabditis elegans males for molecular and biochemical analyses. Li Q, et al. G3 (Bethesda), 2022 May 6. PMID 35404452, Free PMC Article
    3. The SNAPc complex mediates starvation-induced trans-splicing in Caenorhabditis elegans. Hou X, et al. J Genet Genomics, 2022 Oct. PMID 35283340
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans.
      Title: SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in snRNA transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of snRNA-activating protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SNAPc (Small Nuclear RNA Activating Complex) homolog
    NP_001023772.1
    • Product from WormBase gene class snpc;
      Partially confirmed by transcript evidence
    NP_001023773.1
    • Product from WormBase gene class snpc;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      5437084..5439168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001028602.3 → NP_001023773.1  SNAPc (Small Nuclear RNA Activating Complex) homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023773.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JNN6
      Conserved Domains (1) summary
      pfam09808
      Location:16 → 212
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    2. NM_001028601.2 → NP_001023772.1  SNAPc (Small Nuclear RNA Activating Complex) homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023772.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22950
      Conserved Domains (1) summary
      pfam09808
      Location:16 → 212
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43
    Nucleotide Protein
    Heading Accession and Version

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