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    xrep-4 F-box domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172218, updated on 9-Dec-2024

    Summary

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    Official Symbol
    xrep-4
    Official Full Name
    F-box domain-containing protein
    Primary source
    WormBase:WBGene00018509
    Locus tag
    CELE_F46F11.6
    See related
    AllianceGenome:WB:WBGene00018509
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in intestine; muscle cell; neurons; and pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See xrep-4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    8
    Sequence:
    Chromosome: I; NC_003279.8 (5616598..5618551, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene putative V-type proton ATPase subunit G Neighboring gene Trafficking protein particle complex subunit 8 Neighboring gene ncRNA Neighboring gene CSD domain-containing protein Neighboring gene Tenascin Neighboring gene RNA (guanine-9-)-methyltransferase domain-containing protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the molecular and physiological consequences of constitutive SKN-1 activation. Ramos CM, et al. Geroscience, 2023 Dec. PMID 37751046, Free PMC Article
    2. A Genetic Analysis of the Caenorhabditis elegans Detoxification Response. Fukushige T, et al. Genetics, 2017 Jun. PMID 28428286, Free PMC Article
    3. F-Box Protein XREP-4 Is a New Regulator of the Oxidative Stress Response in Caenorhabditis elegans. Wu CW, et al. Genetics, 2017 Jun. PMID 28341649, Free PMC Article
    4. The adhesion GPCR and PCP component flamingo (FMI-1) alters body size and regulates the composition of the extracellular matrix. Schön JL, et al. Matrix Biol, 2024 Apr. PMID 38378098
    5. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box domain-containing protein
    NP_491644.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      5616598..5618551 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059243.10 → NP_491644.2  F-box domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491644.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      P91305
      Conserved Domains (1) summary
      pfam00646
      Location:16 → 60
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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