aly-2 Chromatin target of PRMT1 protein C-terminal domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: aly-2
Official Full Name: Chromatin target of PRMT1 protein C-terminal domain-containing protein
Primary source: WormBase:WBGene00000121
Locus tag: CELE_F23B2.6
See related: AllianceGenome:WB:WBGene00000121
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Is expressed in several structures, including anal region; digestive tract; germ line; gonadal primordium; and midbody. Orthologous to human ALYREF (Aly/REF export factor). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See aly-2 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 3

Sequence:: Chromosome: IV; NC_003282.8 (9147468..9148579)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F23B2.6 (e-PCR)
- UniSTS:316616

F23B2.13 (e-PCR)
- UniSTS:320511

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA export from nucleus	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Chromatin target of PRMT1 protein C-terminal domain-containing protein

NP_501594.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

9147468..9148579

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_069193.7 → NP_501594.1 Chromatin target of PRMT1 protein C-terminal domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_501594.1

Status: REVIEWED

UniProtKB/TrEMBL

O62183

Conserved Domains (2) summary

pfam13865
Location:165 → 227

FoP_duplication; C-terminal duplication domain of Friend of PRMT1

cl17169
Location:81 → 152

RRM_SF; RNA recognition motif (RRM) superfamily