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    clec-264 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 185147, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clec-264
    Official Full Name
    C-type lectin domain-containing protein
    Primary source
    WormBase:WBGene00009291
    Locus tag
    CELE_F31D4.4
    See related
    AllianceGenome:WB:WBGene00009291
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in defense response to Gram-positive bacterium. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clec-264 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (20847702..20850701, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Small ribosomal subunit protein uS12m Neighboring gene Ribosomal RNA-processing protein 42 Neighboring gene Sugar phosphate phosphatase Neighboring gene peptidylprolyl isomerase Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 Neighboring gene Pleckstrin homology domain-containing family D member 1 Neighboring gene Peptidase S1 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. Visvikis O, et al. Immunity, 2014 Jun 19. PMID 24882217, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in defense response to Gram-positive bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-type lectin domain-containing protein
    NP_508027.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20847702..20850701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075626.5 → NP_508027.2  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_508027.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45419
      Conserved Domains (3) summary
      smart00034
      Location:20 → 145
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      cd00041
      Location:156 → 257
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cl00049
      Location:267 → 365
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    Nucleotide Protein
    Heading Accession and Version

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