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    ycgB PF04293 family protein YcgB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946365, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycgB
    Official Full Name
    PF04293 family protein YcgB
    Primary source
    ECOCYC:EG11516
    Locus tag
    b1188
    See related
    ASAP:ABE-0003990
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1176
    Summary
    [More information is available at EcoGene: EG11516]. The ycgB ortholog of Salmonella enterica serovar Typhimurium belongs to the RpoS regulon . [More information is available at EcoCyc: EG11516].
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    Genomic context

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    Sequence:
    NC_000913.3 (1235709..1237241, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene Na(+):H(+) antiporter NhaB Neighboring gene DNA-binding transcriptional dual regulator FadR Neighboring gene D-amino acid dehydrogenase Neighboring gene alanine racemase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Significance of rpoS during maturation of Escherichia coli biofilms. Ito A, et al. Biotechnol Bioeng, 2008 Apr 15. PMID 17979199
    2. Identification of RpoS (sigma(S))-regulated genes in Salmonella enterica serovar typhimurium. Ibanez-Ruiz M, et al. J Bacteriol, 2000 Oct. PMID 11004173, Free PMC Article
    3. Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. Weber H, et al. J Bacteriol, 2005 Mar. PMID 15716429, Free PMC Article
    4. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PF04293 family protein YcgB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1235709..1237241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415706.1 PF04293 family protein YcgB [Escherichia coli str. K-12 substr. MG1655]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2G697, A0A7A6ZU60
      Conserved Domains (1) summary
      PRK11767
      Location:9 → 506
      PRK11767; SpoVR family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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