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    ybiV sugar phosphatase YbiV [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945432, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybiV
    Official Full Name
    sugar phosphatase YbiV
    Primary source
    ECOCYC:G6425
    Locus tag
    b0822
    See related
    ASAP:ABE-0002807
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0812
    Summary
    HAD superfamily. [More information is available at EcoGene: EG13327]. YbiV is a sugar phosphatase belonging to the family of type II haloacid dehalogenase (HAD)-like hydrolases . [More information is available at EcoCyc: G6425].
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    Genomic context

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    Sequence:
    NC_000913.3 (859213..860028, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ATP-binding protein YbiT Neighboring gene DUF1479 domain-containing protein YbiU Neighboring gene putative pyruvate formate lyase Neighboring gene putative pyruvate formate-lyase activating enzyme YbiY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Detection of active sorbitol-6-phosphate phosphatase in the haloacid dehalogenase-like hydrolase superfamily. Chin T, et al. J Gen Appl Microbiol, 2018 Nov 9. PMID 29743459
    2. Metabolomics approach for enzyme discovery. Saito N, et al. J Proteome Res, 2006 Aug. PMID 16889420
    3. Switching of the bacterial flagellar motor near zero load. Yuan J, et al. J Mol Biol, 2009 Jul 17. PMID 19467245, Free PMC Article
    4. YbiV from Escherichia coli K12 is a HAD phosphatase. Roberts A, et al. Proteins, 2005 Mar 1. PMID 15657928
    5. Enzyme genomics: Application of general enzymatic screens to discover new enzymes. Kuznetsova E, et al. FEMS Microbiol Rev, 2005 Apr. PMID 15808744

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YbiV may be a sugar phosphatase (HAD phosphatase)
      Title: YbiV from Escherichia coli K12 is a HAD phosphatase.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables fructose-1-phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sorbitol-6-phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sugar-phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sugar-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    sugar phosphatase YbiV
    NP_415343.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      859213..860028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415343.1 sugar phosphatase YbiV [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415343.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376MU11
      Conserved Domains (1) summary
      cd07518
      Location:4 → 260
      HAD_YbiV-Like; Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily
    Nucleotide Protein
    Heading Accession and Version

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