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    yiiX putative lipid-binding hydrolase YiiX [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948436, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yiiX
    Official Full Name
    putative lipid-binding hydrolase YiiX
    Primary source
    ECOCYC:EG11882
    Locus tag
    b3937
    See related
    ASAP:ABE-0012869
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3929
    Summary
    YebB and YiiX are paralogs. [More information is available at EcoGene: EG11882]. YiiX is a member of a protein superfamily that includes the NlpC/P60 peptidases that exhibit activity toward peptidoglycan (cell wall) . [More information is available at EcoCyc: EG11882].
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    Genomic context

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    Sequence:
    NC_000913.3 (4127286..4127894, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene primosomal protein N' Neighboring gene 50S ribosomal subunit protein L31 Neighboring gene DNA-binding transcriptional repressor MetJ Neighboring gene O-succinylhomoserine(thiol)-lyase/O-succinylhomoserine lyase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
    2. Reshuffling of Rhs components to create a new element. Zhao S, et al. J Bacteriol, 1995 Mar. PMID 7868617, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative lipid-binding hydrolase YiiX

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4127286..4127894 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418372.1 putative lipid-binding hydrolase YiiX [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418372.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6PTB9
      Conserved Domains (1) summary
      PRK10030
      Location:1 → 197
      PRK10030; YiiX family permuted papain-like enzyme
    Nucleotide Protein
    Heading Accession and Version

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