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    ykgE putative lactate utilization oxidoreductase YkgE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948438, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ykgE
    Official Full Name
    putative lactate utilization oxidoreductase YkgE
    Primary source
    ECOCYC:G6176
    Locus tag
    b0306
    See related
    ASAP:ABE-0001058
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0305
    Summary
    AFMB Structural Genomics target Number 40 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13582].
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    Genomic context

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    Sequence:
    NC_000913.3 (321608..322327)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cupric reductase RclA Neighboring gene DNA-binding transcriptional activator RclR Neighboring gene putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain Neighboring gene DUF162 domain-containing lactate utilization protein YkgG Neighboring gene uncharacterized protein YkgH

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization. Pinchuk GE, et al. Proc Natl Acad Sci U S A, 2009 Feb 24. PMID 19196979, Free PMC Article
    2. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    3. A widely conserved gene cluster required for lactate utilization in Bacillus subtilis and its involvement in biofilm formation. Chai Y, et al. J Bacteriol, 2009 Apr. PMID 19201793, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables L-lactate dehydrogenase activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lactate utilization oxidoreductase YkgE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      321608..322327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414840.1 putative lactate utilization oxidoreductase YkgE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414840.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377DWN6
      Conserved Domains (1) summary
      COG0247
      Location:1 → 239
      GlpC; Fe-S oxidoreductase [Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version

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