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    fdoH formate dehydrogenase O subunit beta [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948395, updated on 3-Dec-2024

    Summary

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    Official Symbol
    fdoH
    Official Full Name
    formate dehydrogenase O subunit beta
    Primary source
    ECOCYC:EG11857
    Locus tag
    b3893
    See related
    ASAP:ABE-0012708
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3886
    Summary
    Also known as FDH-Z. [More information is available at EcoGene: EG11857]. By similarity to the paralogous subunit of formate dehydrogenase-N, FdnH, FdoH is thought to contain four [4Fe-4S] clusters and one C-terminal transmembrane helix . [More information is available at EcoCyc: EG11857].
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    Genomic context

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    Sequence:
    NC_000913.3 (4081857..4082759, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YiiF Neighboring gene formate dehydrogenase formation protein Neighboring gene formate dehydrogenase O subunit gamma Neighboring gene formate dehydrogenase O subunit alpha Neighboring gene sulfurtransferase for molybdenum cofactor sulfuration

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of formate dehydrogenases in stationary phase oxidative stress tolerance in Escherichia coli. Iwadate Y, et al. FEMS Microbiol Lett, 2017 Nov 1. PMID 29044403
    2. Expression and operon structure of the sel genes of Escherichia coli and identification of a third selenium-containing formate dehydrogenase isoenzyme. Sawers G, et al. J Bacteriol, 1991 Aug. PMID 1650339, Free PMC Article
    3. A subset of bacterial inner membrane proteins integrated by the twin-arginine translocase. Hatzixanthis K, et al. Mol Microbiol, 2003 Sep. PMID 12940994
    4. The hydrogenases and formate dehydrogenases of Escherichia coli. Sawers G. Antonie Van Leeuwenhoek, 1994. PMID 7747941
    5. Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli. Benoit S, et al. J Bacteriol, 1998 Dec. PMID 9852007, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables formate dehydrogenase (quinone) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in anaerobic electron transport chain NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within anaerobic respiration EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in cellular respiration IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cellular respiration IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within formate oxidation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in formate oxidation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in formate oxidation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in heme oxidation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within respiratory electron transport chain EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of formate dehydrogenase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of formate dehydrogenase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in membrane HDA PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    formate dehydrogenase O subunit beta
    NP_418329.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4081857..4082759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418329.1 formate dehydrogenase O subunit beta [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418329.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AMJ6
      Conserved Domains (1) summary
      TIGR01582
      Location:7 → 288
      FDH-beta; formate dehydrogenase, beta subunit, Fe-S containing
    Nucleotide Protein
    Heading Accession and Version

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