U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cfap107 cilia and flagella associated protein 107 [ Mus musculus (house mouse) ]

    Gene ID: 69364, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cfap107provided by MGI
    Official Full Name
    cilia and flagella associated protein 107provided by MGI
    Primary source
    MGI:MGI:1916614
    See related
    Ensembl:ENSMUSG00000028589 AllianceGenome:MGI:1916614
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700012P22Rik
    Summary
    Involved in flagellated sperm motility. Is active in axonemal A tubule inner sheath and sperm flagellum. Orthologous to human CFAP107 (cilia and flagella associated protein 107). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 49.0) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cfap107 in Genome Data Viewer
    Location:
    4 E1; 4 77.98 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (144144759..144165363, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (144418189..144438793, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene PRAME like 15 Neighboring gene PRAME like 13 Neighboring gene STARR-seq mESC enhancer starr_11986 Neighboring gene STARR-seq mESC enhancer starr_11987 Neighboring gene arylacetamide deacetylase like 3 Neighboring gene chromobox homolog 3 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Clone Names

    • MGC118354, MGC144256

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in flagellated sperm motility IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in axonemal A tubule inner sheath IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in axonemal microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in axonemal microtubule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in axonemal microtubule ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    is_active_in sperm flagellum IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cilia- and flagella-associated protein 107
    Names
    protein CFAP107
    uncharacterized protein C1orf158 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027056.1NP_081332.1  cilia- and flagella-associated protein 107

      See identical proteins and their annotated locations for NP_081332.1

      Status: VALIDATED

      Source sequence(s)
      BC099569
      Consensus CDS
      CCDS51365.1
      UniProtKB/Swiss-Prot
      A2A7Z7, Q08EE4, Q4KKZ1, Q9DAD4
      Related
      ENSMUSP00000030323.3, ENSMUST00000030323.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      144144759..144165363 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539154.2XP_006539217.1  cilia- and flagella-associated protein 107 isoform X1