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    2310009B15Rik RIKEN cDNA 2310009B15 gene [ Mus musculus (house mouse) ]

    Gene ID: 69549, updated on 9-Dec-2024

    Summary

    Official Symbol
    2310009B15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310009B15 geneprovided by MGI
    Primary source
    MGI:MGI:1916799
    See related
    Ensembl:ENSMUSG00000079283 AllianceGenome:MGI:1916799
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C1orf53 (chromosome 1 open reading frame 53). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in ovary adult (RPKM 14.9), adrenal adult (RPKM 14.3) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See 2310009B15Rik in Genome Data Viewer
    Location:
    1 E4; 1 60.82 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (138779717..138784592, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (138851979..138856854, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02466 Neighboring gene predicted gene 8790 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:140682812-140682921 Neighboring gene STARR-seq mESC enhancer starr_02467 Neighboring gene STARR-positive B cell enhancer mm9_chr1:140753241-140753541 Neighboring gene STARR-seq mESC enhancer starr_02468 Neighboring gene RIKEN cDNA 1700019P21 gene Neighboring gene LIM homeobox protein 9 Neighboring gene STARR-seq mESC enhancer starr_02470 Neighboring gene STARR-positive B cell enhancer ABC_E4352 Neighboring gene RIKEN cDNA 4930596I21 gene Neighboring gene STARR-positive B cell enhancer mm9_chr1:140872594-140872895 Neighboring gene DENN domain containing 1B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    uncharacterized protein C1orf53 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081226.1 → NP_001074695.1  uncharacterized protein C1orf53 homolog

      See identical proteins and their annotated locations for NP_001074695.1

      Status: PROVISIONAL

      Source sequence(s)
      AC144921
      Consensus CDS
      CCDS35727.1
      UniProtKB/TrEMBL
      D3Z1T2
      Related
      ENSMUSP00000107656.2, ENSMUST00000112025.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      138779717..138784592 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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