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    Lncppara long noncoding RNA near Ppara [ Mus musculus (house mouse) ]

    Gene ID: 102800312, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Lncpparaprovided by MGI
    Official Full Name
    long noncoding RNA near Pparaprovided by MGI
    Primary source
    MGI:MGI:5568843
    See related
    Ensembl:ENSMUSG00000116305 AllianceGenome:MGI:5568843
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lincppara; Mirlet7bhg; linc-Ppara
    Expression
    Broad expression in cerebellum adult (RPKM 7.1), frontal lobe adult (RPKM 4.9) and 18 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Lncppara in Genome Data Viewer
    Location:
    15 E2; 15
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (85530302..85591725)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (85703773..85707524)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27 pseudogene Neighboring gene wingless-type MMTV integration site family, member 7B Neighboring gene expressed sequence AU022754 Neighboring gene STARR-positive B cell enhancer mm9_chr15:85465006-85465307 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:85484419-85484572 Neighboring gene microRNA let7c-2 Neighboring gene microRNA let7b Neighboring gene predicted gene, 34622 Neighboring gene predicted gene, 46529

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Other Names

    • MIRLET7B host gene (non-protein coding)
    • long intergenic noncoding RNA near Ppara

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110483.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162302

    2. NR_185126.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162302
      Related
      ENSMUST00000241017.2

    3. NR_188491.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162302
      Related
      ENSMUST00000230913.4

    4. NR_188493.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162302

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      85530302..85591725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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