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    Rai2 retinoic acid induced 2 [ Mus musculus (house mouse) ]

    Gene ID: 24004, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rai2provided by MGI
    Official Full Name
    retinoic acid induced 2provided by MGI
    Primary source
    MGI:MGI:1344378
    See related
    Ensembl:ENSMUSG00000043518 AllianceGenome:MGI:1344378
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    3f8
    Summary
    Predicted to be involved in animal organ development. Predicted to be active in nucleus. Is expressed in branchial arch; nervous system; pancreas epithelium; and retina. Orthologous to human RAI2 (retinoic acid induced 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in ovary adult (RPKM 13.7), heart adult (RPKM 12.5) and 24 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rai2 in Genome Data Viewer
    Location:
    X F4; X 74.07 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (160500032..160562490)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (161717036..161779494)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP dependent, catalytic, alpha pseudogene 1 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene STARR-seq mESC enhancer starr_48196 Neighboring gene STARR-seq mESC enhancer starr_48197 Neighboring gene Scm polycomb group protein like 1 Neighboring gene NHS actin remodeling regulator Neighboring gene STARR-seq mESC enhancer starr_48200 Neighboring gene STARR-seq mESC enhancer starr_48202 Neighboring gene predicted gene, 26317

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in animal organ development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    retinoic acid-induced protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103367.1NP_001096837.1  retinoic acid-induced protein 2

      See identical proteins and their annotated locations for NP_001096837.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK143442, BB173369, BB857753, BY283618, BY589134
      Consensus CDS
      CCDS30507.1
      UniProtKB/Swiss-Prot
      Q3UPL8, Q9QVY8
      UniProtKB/TrEMBL
      Q6P8M4
      Related
      ENSMUSP00000107957.2, ENSMUST00000112338.2
    2. NM_198409.3NP_940801.2  retinoic acid-induced protein 2

      See identical proteins and their annotated locations for NP_940801.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BB173369, BC061184, BY100054, X76652
      Consensus CDS
      CCDS30507.1
      UniProtKB/Swiss-Prot
      Q3UPL8, Q9QVY8
      UniProtKB/TrEMBL
      Q6P8M4
      Related
      ENSMUSP00000051618.8, ENSMUST00000061514.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      160500032..160562490
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)