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    lncRNA:CR31044 long non-coding RNA::CR31044 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 10178917, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lncRNA:CR31044provided by FlyBase
    Official Full Name
    long non-coding RNA::CR31044provided by FlyBase
    Primary source
    FLYBASE:FBgn0051044
    Locus tag
    Dmel_CR31044
    See related
    AllianceGenome:FB:FBgn0051044
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:SD09455; CG31044; CR31044; Dmel\CR31044; pri-mir-279_mir-996
    Old locus tag
    Dmel_CG31044
    Summary
    Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Is expressed in embryonic/larval salivary gland; embryonic/larval salivary gland body; and organism. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lncRNA:CR31044 in Genome Data Viewer
    Location:
    99A1-99A1; 3-98 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (29214562..29219667)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (25040284..25045389)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Metazoan SpoT homolog-1 Neighboring gene Cytochrome c1-like Neighboring gene mir-279 stem loop Neighboring gene mir-996 stem loop Neighboring gene eukaryotic translation elongation factor 1 gamma Neighboring gene CDGSH iron sulfur domain 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple In Vivo Biological Processes Are Mediated by Functionally Redundant Activities of Drosophila mir-279 and mir-996. Sun K, et al. PLoS Genet, 2015 Jun. PMID 26042831, Free PMC Article
    2. Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes. Lin MF, et al. Genome Res, 2007 Dec. PMID 17989253, Free PMC Article
    3. Gain-of-function screen identifies a role of the Src64 oncogene in Drosophila mushroom body development. Nicolaï M, et al. J Neurobiol, 2003 Dec. PMID 14608664
    4. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Stark A, et al. Nature, 2007 Nov 8. PMID 17994088, Free PMC Article
    5. An in vivo RNA interference screen identifies gene networks controlling Drosophila melanogaster blood cell homeostasis. Avet-Rochex A, et al. BMC Dev Biol, 2010 Jun 11. PMID 20540764, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    • lncRNA:CR31044-RA; Dmel\lncRNA:CR31044-RA; CR31044-RA; Dmel\CR31044-RA
    • lncRNA:CR31044-RB; Dmel\lncRNA:CR31044-RB; CR31044-RB; Dmel\CR31044-RB
    • lncRNA:CR31044-RC; Dmel\lncRNA:CR31044-RC; CR31044-RC; Dmel\CR31044-RC

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      29214562..29219667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_037769.1 RNA Sequence

      Status: REVIEWED

    2. NR_037770.1 RNA Sequence

      Status: REVIEWED

    3. NR_037768.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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