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    Msantd5f6 Myb/SANT DNA binding domain containing 5 family member 6 [ Mus musculus (house mouse) ]

    Gene ID: 433719, updated on 27-Nov-2024

    Summary

    Official Symbol
    Msantd5f6provided by MGI
    Official Full Name
    Myb/SANT DNA binding domain containing 5 family member 6provided by MGI
    Primary source
    MGI:MGI:3650704
    See related
    Ensembl:ENSMUSG00000066137 AllianceGenome:MGI:3650704
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm11487
    Summary
    This gene belongs to a family of related genes tandemly arranged in two clusters on chromosome 4. This family, which appears to be mouse-specific and composed of multiple highly similar members, is supported by limited transcript data. Members of the family maintain an intact open reading frame although the encoded protein has no known function. This gene is inferred from alignment of paralogous transcripts. [provided by RefSeq, Apr 2013]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Msantd5f6 in Genome Data Viewer
    Location:
    4 C3; 4 36.06 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (73319269..73325641, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (73401032..73407404, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene PRP4 pre-mRNA processing factor 4 homolog B pseudogene Neighboring gene predicted gene, 25769 Neighboring gene STARR-seq mESC enhancer starr_10536 Neighboring gene STARR-seq mESC enhancer starr_10537 Neighboring gene ribonucleotide reductase M2 pseudogene Neighboring gene heterogeneous nuclear ribonucleoprotein D-like pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC433719

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013393.1NP_001013411.1  uncharacterized protein LOC433719

      See identical proteins and their annotated locations for NP_001013411.1

      Status: PREDICTED

      Source sequence(s)
      BX247953
      Consensus CDS
      CCDS51205.1
      UniProtKB/TrEMBL
      E9Q5Z9, Q5RIS0
      Related
      ENSMUSP00000081520.5, ENSMUST00000084480.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      73319269..73325641 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011250063.1XP_011248365.1  uncharacterized protein LOC433719 isoform X1

      UniProtKB/TrEMBL
      E9Q5Z9