U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tlnrd1 talin rod domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 80889, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tlnrd1provided by MGI
    Official Full Name
    talin rod domain containing 1provided by MGI
    Primary source
    MGI:MGI:1891420
    See related
    Ensembl:ENSMUSG00000070462 AllianceGenome:MGI:1891420
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mesdc1
    Summary
    Enables actin binding activity. Colocalizes with stress fiber. Is expressed in several structures, including 4-cell stage embryo; genitourinary system; liver; lung; and spleen. Orthologous to human TLNRD1 (talin rod domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tlnrd1 in Genome Data Viewer
    Location:
    7 D3; 7 48.33 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (83529703..83533549, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (83880495..83884341, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm729 Neighboring gene predicted gene, 39043 Neighboring gene STARR-seq mESC enhancer starr_19412 Neighboring gene STARR-seq mESC enhancer starr_19413 Neighboring gene RIKEN cDNA 3110009M11 gene Neighboring gene STARR-seq mESC enhancer starr_19414 Neighboring gene STARR-positive B cell enhancer ABC_E9696 Neighboring gene STARR-positive B cell enhancer ABC_E448 Neighboring gene mesoderm development LRP chaperone Neighboring gene STARR-seq mESC enhancer starr_19417 Neighboring gene STARR-seq mESC enhancer starr_19418 Neighboring gene cell migration inducing protein, hyaluronan binding Neighboring gene predicted gene, 30440 Neighboring gene STARR-seq mESC enhancer starr_19420 Neighboring gene STARR-seq mESC enhancer starr_19424 Neighboring gene STARR-seq mESC enhancer starr_19425 Neighboring gene STARR-seq mESC enhancer starr_19426 Neighboring gene abhydrolase domain containing 17C

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables actin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables actin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    colocalizes_with stress fiber IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    talin rod domain-containing protein 1
    Names
    mesoderm development candidate 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030705.4NP_109630.1  talin rod domain-containing protein 1

      See identical proteins and their annotated locations for NP_109630.1

      Status: VALIDATED

      Source sequence(s)
      AK084510, AK162446, BB629761
      Consensus CDS
      CCDS21414.1
      UniProtKB/Swiss-Prot
      Q542D0, Q9ERE8
      Related
      ENSMUSP00000091769.4, ENSMUST00000094216.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      83529703..83533549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)