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    Ct55 cancer/testis antigen 55 [ Mus musculus (house mouse) ]

    Gene ID: 75013, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ct55provided by MGI
    Official Full Name
    cancer/testis antigen 55provided by MGI
    Primary source
    MGI:MGI:1922263
    See related
    Ensembl:ENSMUSG00000055555 AllianceGenome:MGI:1922263
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930502E18Rik
    Summary
    Involved in spermatogenesis. Located in acrosomal vesicle and sperm flagellum. Human ortholog(s) of this gene implicated in X-linked spermatogenic failure 7. Orthologous to human CT55 (cancer/testis antigen 55). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in placenta adult (RPKM 2.0), testis adult (RPKM 1.6) and 3 other tissues See more
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    Genomic context

    See Ct55 in Genome Data Viewer
    Location:
    X A5; X 29.99 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52726622..52740532)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53724655..53738565)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene 53064 Neighboring gene expressed sequence AW822252 Neighboring gene RIKEN cDNA 1700013H16 gene Neighboring gene predicted pseudogene 6025

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in acrosomal vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in acrosomal vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sperm flagellum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029142.1NP_083418.1  cancer/testis antigen 55

      See identical proteins and their annotated locations for NP_083418.1

      Status: PROVISIONAL

      Source sequence(s)
      BC115664
      Consensus CDS
      CCDS30136.1
      UniProtKB/Swiss-Prot
      Q14BQ3, Q9D585
      Related
      ENSMUSP00000064619.2, ENSMUST00000069209.2
      Conserved Domains (1) summary
      pfam14444
      Location:176228
      S1-like; S1-like

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      52726622..52740532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535359.2XP_006535422.1  cancer/testis antigen 55 isoform X1

      UniProtKB/TrEMBL
      A0A9L6KDX3
      Conserved Domains (1) summary
      pfam14444
      Location:111163
      S1-like