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    Ajm1 apical junction component 1 [ Mus musculus (house mouse) ]

    Gene ID: 381353, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ajm1provided by MGI
    Official Full Name
    apical junction component 1provided by MGI
    Primary source
    MGI:MGI:2685842
    See related
    Ensembl:ENSMUSG00000029419 AllianceGenome:MGI:2685842
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm996
    Summary
    Predicted to be involved in cell-cell junction organization. Predicted to be located in adherens junction; apical plasma membrane; and cilium. Predicted to be active in apical junction complex and plasma membrane. Orthologous to human AJM1 (apical junction component 1 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Ajm1 in Genome Data Viewer
    Location:
    2 A3; 2 17.44 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25465428..25471760, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25575416..25580099, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene endothelial differentiation-related factor 1 Neighboring gene MAM domain containing 4 Neighboring gene STARR-positive B cell enhancer ABC_E1582 Neighboring gene phosphohistidine phosphatase 1 Neighboring gene RAB, member RAS oncogene family-like 6 Neighboring gene coiled-coil domain containing 183 Neighboring gene ficolin A, opposite strand

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Clone Names

    • MGC69896

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in cell-cell junction organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cell-cell junction organization IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in apical junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    apical junction component 1 homolog
    Names
    Uncharacterized protein C9orf172 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005424.3NP_001005424.2  apical junction component 1 homolog

      See identical proteins and their annotated locations for NP_001005424.2

      Status: VALIDATED

      Source sequence(s)
      AL732590
      Consensus CDS
      CCDS50532.1
      UniProtKB/Swiss-Prot
      A2AJA9, Q6P0A3
      Related
      ENSMUSP00000109855.2, ENSMUST00000114217.3
      Conserved Domains (1) summary
      pfam01753
      Location:668710
      zf-MYND; MYND finger
    2. NM_001399245.1NP_001386174.1  apical junction component 1 homolog

      Status: VALIDATED

      Source sequence(s)
      AL732590
      UniProtKB/Swiss-Prot
      A2AJA9, Q6P0A3
      Related
      ENSMUSP00000140109.2, ENSMUST00000191602.2
      Conserved Domains (1) summary
      pfam01753
      Location:668710
      zf-MYND; MYND finger

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      25465428..25471760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)