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    Rtl8c retrotransposon Gag like 8C [ Mus musculus (house mouse) ]

    Gene ID: 72865, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rtl8cprovided by MGI
    Official Full Name
    retrotransposon Gag like 8Cprovided by MGI
    Primary source
    MGI:MGI:1920115
    See related
    Ensembl:ENSMUSG00000051851 AllianceGenome:MGI:1920115
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cxx1c; Mar8.1; Mart8a; 2900027G03Rik
    Summary
    Is expressed in cranial ganglion; dorsal root ganglion; and neural retina. Orthologous to several human genes including RTL8A (retrotransposon Gag like 8A) and RTL8B (retrotransposon Gag like 8B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in cerebellum adult (RPKM 113.8), adrenal adult (RPKM 112.3) and 23 other tissues See more
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    Genomic context

    See Rtl8c in Genome Data Viewer
    Location:
    X A5; X 29.82 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52609889..52611102)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53607922..53609135)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene golgin subfamily A member 6-like protein 22 Neighboring gene RIKEN cDNA 4933416I08 gene Neighboring gene splicing factor 3a, subunit 3 pseudogene Neighboring gene centromere protein K pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    CAAX box 1 homolog C
    Names
    CAAX box 1C
    mammalian retrotransposon derived 8a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028375.3NP_082651.1  CAAX box 1 homolog C

      See identical proteins and their annotated locations for NP_082651.1

      Status: VALIDATED

      Source sequence(s)
      AK013603, BX529499, BY123946, CK627323
      Consensus CDS
      CCDS40975.1
      UniProtKB/TrEMBL
      Q9D6I0
      Related
      ENSMUSP00000069901.4, ENSMUST00000063384.4
      Conserved Domains (1) summary
      pfam16297
      Location:2112
      DUF4939; Domain of unknown function (DUF4939)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      52609889..52611102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)