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    Lcn8 lipocalin 8 [ Mus musculus (house mouse) ]

    Gene ID: 78076, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lcn8provided by MGI
    Official Full Name
    lipocalin 8provided by MGI
    Primary source
    MGI:MGI:2135945
    See related
    Ensembl:ENSMUSG00000036449 AllianceGenome:MGI:2135945
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EP17; Lcn5; mEP17; 9230106L18Rik
    Summary
    Predicted to enable small molecule binding activity. Acts upstream of or within response to hormone. Predicted to be located in extracellular region. Orthologous to human LCN8 (lipocalin 8). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward genital fat pad adult (RPKM 2151.2) See more
    Orthologs
    NEW
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    Genomic context

    See Lcn8 in Genome Data Viewer
    Location:
    2 A3; 2 17.67 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25543130..25546229)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25653118..25656217)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ficolin A Neighboring gene predicted gene, 35630 Neighboring gene lipocalin 15 Neighboring gene lipocalin 5 Neighboring gene lipocalin 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3)  1 citation
    • Targeted (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    enables small molecule binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to hormone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    epididymal-specific lipocalin-8
    Names
    epididymal 17 kDa lipocalin
    lipocalin 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033145.1NP_149157.1  epididymal-specific lipocalin-8 precursor

      See identical proteins and their annotated locations for NP_149157.1

      Status: VALIDATED

      Source sequence(s)
      AF082221
      Consensus CDS
      CCDS15786.1
      UniProtKB/Swiss-Prot
      Q924P3
      Related
      ENSMUSP00000043902.7, ENSMUST00000038482.7
      Conserved Domains (1) summary
      pfam00061
      Location:33157
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      25543130..25546229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)