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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001146174.1 → NP_001139646.1 ran GTPase-activating protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 3. These differences cause translation initiation at a downstream AUG and result in an isoform (1) with a shorter N-terminus, compared to isoform 2.
- Source sequence(s)
-
AK159525, BY287991, BY438103
- Consensus CDS
-
CCDS27670.1
- UniProtKB/Swiss-Prot
- P46061, Q60801, Q6NZB5
- UniProtKB/TrEMBL
-
Q91YS2
- Related
- ENSMUSP00000057771.6, ENSMUST00000052374.13
- Conserved Domains (3) summary
-
- cd00116
Location:21 → 358
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:51 → 81
- LRR_RI; leucine-rich repeat [structural motif]
- pfam07834
Location:408 → 587
- RanGAP1_C; RanGAP1 C-terminal domain
-
NM_001358622.1 → NP_001345551.1 ran GTPase-activating protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) encodes the longer isoform (2).
- Source sequence(s)
-
AC102262, AC158970
- UniProtKB/TrEMBL
-
Q91YS2
- Conserved Domains (3) summary
-
- cd00116
Location:69 → 406
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:99 → 129
- LRR_RI; leucine-rich repeat [structural motif]
- pfam07834
Location:456 → 635
- RanGAP1_C; RanGAP1 C-terminal domain
-
NM_011241.4 → NP_035371.4 ran GTPase-activating protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR and has multiple coding region differences, compared to variant 3. These differences cause translation initiation at a downstream AUG and result in an isoform (1) with a shorter N-terminus, compared to isoform 2.
- Source sequence(s)
-
AK146670, AK159525, BY287991, BY438103
- Consensus CDS
-
CCDS27670.1
- UniProtKB/Swiss-Prot
- P46061, Q60801, Q6NZB5
- UniProtKB/TrEMBL
-
Q91YS2
- Related
- ENSMUSP00000126849.2, ENSMUST00000170134.9
- Conserved Domains (3) summary
-
- cd00116
Location:21 → 358
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:51 → 81
- LRR_RI; leucine-rich repeat [structural motif]
- pfam07834
Location:408 → 587
- RanGAP1_C; RanGAP1 C-terminal domain
RNA
-
NR_152441.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate 5' and 3' exon structure, compared to variant 3. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 3, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC102262, AC158970
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000081.7 Reference GRCm39 C57BL/6J
- Range
-
81588449..81614120 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
RNA
-
XR_383994.2 RNA Sequence