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    1700013H16Rik RIKEN cDNA 1700013H16 gene [ Mus musculus (house mouse) ]

    Gene ID: 75514, updated on 9-Dec-2024

    Summary

    Official Symbol
    1700013H16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700013H16 geneprovided by MGI
    Primary source
    MGI:MGI:1922764
    See related
    Ensembl:ENSMUSG00000054727 AllianceGenome:MGI:1922764
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Slx2; Xlr6
    Summary
    Predicted to be involved in meiotic cell cycle and spermatid development. Located in XY body; chromatin; and nucleolus. Is expressed in gonad. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 1.5) See more
    NEW
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    Genomic context

    See 1700013H16Rik in Genome Data Viewer
    Location:
    X A5; X 30.01 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52744868..52759936, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53742901..53757970, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene expressed sequence AW822252 Neighboring gene cancer/testis antigen 55 Neighboring gene predicted pseudogene 6025 Neighboring gene zinc finger protein 36, C3H type-like 3 Neighboring gene 60S ribosomal protein L37 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in meiotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in spermatid development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in XY body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in chromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in synaptonemal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    synaptonemal complex protein 3-like
    Names
    SYCP3-like X-linked 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200013.1NP_001186942.1  synaptonemal complex protein 3-like

      See identical proteins and their annotated locations for NP_001186942.1

      Status: VALIDATED

      Source sequence(s)
      AK005953, AL691513
      Consensus CDS
      CCDS53071.1
      UniProtKB/TrEMBL
      Q9DAC5
      Related
      ENSMUSP00000063474.3, ENSMUST00000067940.3
      Conserved Domains (2) summary
      pfam04803
      Location:151270
      Cor1; Cor1/Xlr/Xmr conserved region
      pfam15724
      Location:469
      TMEM119; TMEM119 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      52744868..52759936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535361.4XP_006535424.1  synaptonemal complex protein 3-like isoform X1

      Conserved Domains (1) summary
      pfam04803
      Location:11142
      Cor1; Cor1/Xlr/Xmr conserved region