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    GOLGA6L6 golgin A6 family like 6 (gene/pseudogene) [ Homo sapiens (human) ]

    Gene ID: 727832, updated on 27-Nov-2024

    Summary

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    Official Symbol
    GOLGA6L6provided by HGNC
    Official Full Name
    golgin A6 family like 6 (gene/pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:37225
    See related
    Ensembl:ENSG00000277322 AllianceGenome:HGNC:37225
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.1) See more
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    Genomic context

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    See GOLGA6L6 in Genome Data Viewer
    Location:
    15q11.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (20531856..20541800, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (18443674..18453636, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (20737094..20747114, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene HERC2 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:20707920-20708594 Neighboring gene E3 ubiquitin-protein ligase HERC2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:20736451-20736951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:20738609-20739110 Neighboring gene MPHOSPH10 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:20775869-20776369 Neighboring gene golgin A8 family member C, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 759, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
    2. Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer. Vichas A, et al. Nat Commun, 2021 Aug 9. PMID 34373451, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ36131

    General protein information

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    Preferred Names
    golgin subfamily A member 6-like protein 6
    Names
    golgi autoantigen, golgin subfamily a, 6-like 6
    putative golgin subfamily A member 6-like protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145004.2 → NP_001138476.2  golgin subfamily A member 6-like protein 6

      Status: VALIDATED

      Source sequence(s)
      AC023310
      Consensus CDS
      CCDS45184.1
      UniProtKB/Swiss-Prot
      A8MZA4, D3YTC0
      Related
      ENSP00000480376.1, ENST00000619213.1
      Conserved Domains (1) summary
      pfam13868
      Location:367 → 713
      TPH; Trichohyalin-plectin-homology domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      20531856..20541800 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021160017.1 Reference GRCh38.p14 PATCHES

      Range
      773566..783509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      18443674..18453636 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8MZA4.4 GenPept UniProtKB/Swiss-Prot:A8MZA4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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