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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001206736.2 → NP_001193665.1 NSFL1 cofactor p47 isoform d
See identical proteins and their annotated locations for NP_001193665.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) includes an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (d) that is longer than isoform a.
- Source sequence(s)
-
AA948047, AF086909, AL109658, DB173022
- Consensus CDS
-
CCDS56175.1
- UniProtKB/TrEMBL
-
Q53FF5
- Related
- ENSP00000418529.1, ENST00000476071.5
- Conserved Domains (3) summary
-
- smart00553
Location:180 → 272
- SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
- cd14348
Location:7 → 45
- UBA_p47; UBA-like domain found in NSFL1 cofactor p47 and similar proteins
- cd17162
Location:291 → 372
- UBX_UBXN2C; Ubiquitin regulatory domain X (UBX) found in NSFL1 cofactor (also known as UBX domain-containing protein 2C (UBXN2C) and similar proteins
-
NM_016143.5 → NP_057227.2 NSFL1 cofactor p47 isoform a
See identical proteins and their annotated locations for NP_057227.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AA948047, AK315433, AL109658, DB173022
- Consensus CDS
-
CCDS13015.1
- UniProtKB/Swiss-Prot
- A2A2L1, B2RD74, Q5JXA4, Q5JXA5, Q7Z533, Q9H102, Q9NVL9, Q9UI06, Q9UNZ2
- UniProtKB/TrEMBL
-
Q53FE8
- Related
- ENSP00000216879.4, ENST00000216879.9
- Conserved Domains (3) summary
-
- smart00553
Location:178 → 270
- SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
- cd14348
Location:7 → 45
- UBA_p47; UBA-like domain found in NSFL1 cofactor p47 and similar proteins
- cd17162
Location:289 → 370
- UBX_UBXN2C; Ubiquitin regulatory domain X (UBX) found in NSFL1 cofactor (also known as UBX domain-containing protein 2C (UBXN2C) and similar proteins
-
NM_018839.5 → NP_061327.2 NSFL1 cofactor p47 isoform b
See identical proteins and their annotated locations for NP_061327.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a.
- Source sequence(s)
-
AA948047, AK001511, AL109658, DB173022
- Consensus CDS
-
CCDS13016.1
- UniProtKB/TrEMBL
-
Q53FE8
- Related
- ENSP00000338643.2, ENST00000353088.6
- Conserved Domains (3) summary
-
- cd01770
Location:261 → 339
- p47_UBX; p47-like ubiquitin domain
- smart00553
Location:148 → 239
- SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
- cd14348
Location:7 → 45
- UBA_p47; UBA-like domain found in NSFL1 cofactor p47 and similar proteins
RNA
-
NR_038164.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon in the 5' region and uses an alternate splice site in the central region, compared to variant 1. This variant is represented as non-coding because the use of the supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AA948047, AK297403, AL109658, DB173022
- Related
-
ENST00000555944.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000020.11 Reference GRCh38.p14 Primary Assembly
- Range
-
1442166..1466849 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006723593.4 → XP_006723656.1 NSFL1 cofactor p47 isoform X9
See identical proteins and their annotated locations for XP_006723656.1
- Conserved Domains (2) summary
-
- cd01770
Location:183 → 261
- p47_UBX; p47-like ubiquitin domain
- smart00553
Location:69 → 161
- SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
-
XM_011529301.3 → XP_011527603.1 NSFL1 cofactor p47 isoform X2
- UniProtKB/TrEMBL
-
Q53FE8
- Conserved Domains (3) summary
-
- cd01770
Location:295 → 373
- p47_UBX; p47-like ubiquitin domain
- smart00553
Location:181 → 273
- SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
- cd14348
Location:7 → 45
- UBA_p47; UBA-like domain found in NSFL1 cofactor p47 and similar proteins
-
XM_011529300.3 → XP_011527602.1 NSFL1 cofactor p47 isoform X1
- UniProtKB/TrEMBL
-
Q53FF5
- Conserved Domains (3) summary
-
- cd01770
Location:297 → 375
- p47_UBX; p47-like ubiquitin domain
- smart00553
Location:183 → 275
- SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
- cd14348
Location:7 → 45
- UBA_p47; UBA-like domain found in NSFL1 cofactor p47 and similar proteins
-
XM_047440307.1 → XP_047296263.1 NSFL1 cofactor p47 isoform X10
-
XM_047440305.1 → XP_047296261.1 NSFL1 cofactor p47 isoform X9
-
XM_047440303.1 → XP_047296259.1 NSFL1 cofactor p47 isoform X6
- UniProtKB/TrEMBL
-
Q53FE8
-
XM_047440302.1 → XP_047296258.1 NSFL1 cofactor p47 isoform X4
- UniProtKB/TrEMBL
-
Q53FF5
-
XM_047440306.1 → XP_047296262.1 NSFL1 cofactor p47 isoform X10
-
XM_011529302.3 → XP_011527604.1 NSFL1 cofactor p47 isoform X3
- UniProtKB/TrEMBL
-
Q53FF5
- Conserved Domains (2) summary
-
- cd01770
Location:244 → 322
- p47_UBX; p47-like ubiquitin domain
- smart00553
Location:130 → 222
- SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
-
XM_017027956.2 → XP_016883445.1 NSFL1 cofactor p47 isoform X5
- UniProtKB/TrEMBL
-
Q53FE8
-
XM_017027958.3 → XP_016883447.1 NSFL1 cofactor p47 isoform X7
-
XM_047440304.1 → XP_047296260.1 NSFL1 cofactor p47 isoform X8
- UniProtKB/TrEMBL
-
F2Z2K0
- Related
- ENSP00000434067.1, ENST00000381653.9
Alternate T2T-CHM13v2.0
Genomic
-
NC_060944.1 Alternate T2T-CHM13v2.0
- Range
-
1491358..1516046 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054323718.1 → XP_054179693.1 NSFL1 cofactor p47 isoform X9
-
XM_054323710.1 → XP_054179685.1 NSFL1 cofactor p47 isoform X2
- UniProtKB/TrEMBL
-
Q53FE8
-
XM_054323709.1 → XP_054179684.1 NSFL1 cofactor p47 isoform X1
- UniProtKB/TrEMBL
-
Q53FF5
-
XM_054323720.1 → XP_054179695.1 NSFL1 cofactor p47 isoform X10
-
XM_054323717.1 → XP_054179692.1 NSFL1 cofactor p47 isoform X9
-
XM_054323714.1 → XP_054179689.1 NSFL1 cofactor p47 isoform X6
- UniProtKB/TrEMBL
-
Q53FE8
-
XM_054323712.1 → XP_054179687.1 NSFL1 cofactor p47 isoform X4
- UniProtKB/TrEMBL
-
Q53FF5
-
XM_054323719.1 → XP_054179694.1 NSFL1 cofactor p47 isoform X10
-
XM_054323711.1 → XP_054179686.1 NSFL1 cofactor p47 isoform X3
- UniProtKB/TrEMBL
-
Q53FF5
-
XM_054323713.1 → XP_054179688.1 NSFL1 cofactor p47 isoform X5
- UniProtKB/TrEMBL
-
Q53FE8
-
XM_054323715.1 → XP_054179690.1 NSFL1 cofactor p47 isoform X7
-
XM_054323716.1 → XP_054179691.1 NSFL1 cofactor p47 isoform X8
- UniProtKB/TrEMBL
-
F2Z2K0
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_182483.1: Suppressed sequence
- Description
- NM_182483.1: This RefSeq was permanently suppressed because the transcript is a nonsense-mediated mRNA decay (NMD) candidate.