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    SEC22B2P SEC22 homolog B2, pseudogene [ Homo sapiens (human) ]

    Gene ID: 100996716, updated on 10-Dec-2024

    Summary

    Official Symbol
    SEC22B2Pprovided by HGNC
    Official Full Name
    SEC22 homolog B2, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:53890
    See related
    AllianceGenome:HGNC:53890
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SEC22B2; CH17-189H20.1
    Expression
    Ubiquitous expression in fat (RPKM 6.0), prostate (RPKM 5.3) and 25 other tissues See more
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    Genomic context

    See SEC22B2P in Genome Data Viewer
    Location:
    1q21.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (149338283..149363915)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (145995926..146021569)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 (PATCHES) NW_003871055.3 (6153696..6179328)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 4D interacting protein-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144691669-144692454 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144706370-144707235 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144983763-144984287 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144709889-144710390 Neighboring gene uncharacterized LOC124904395 Neighboring gene uncharacterized LOC105371403 Neighboring gene notch 2 N-terminal like C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_158171.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC242843

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      149338283..149363915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      145995926..146021569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)