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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_007468.1 RefSeqGene
- Range
-
6272..17169
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_816
mRNA and Protein(s)
-
NM_001322243.2 → NP_001309172.1 basigin isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (5), as well as variant 2, encodes isoform 2.
- Source sequence(s)
-
AC009005, CB153773, GU557064
- Consensus CDS
-
CCDS12034.1
- UniProtKB/TrEMBL
- A0A7P0TA85, A0A7P0TB04, Q54A51
- Conserved Domains (1) summary
-
- smart00409
Location:112 → 202
- IG; Immunoglobulin
-
NM_001728.4 → NP_001719.2 basigin isoform 1 precursor
See identical proteins and their annotated locations for NP_001719.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AY358113, GU557064
- Consensus CDS
-
CCDS12033.1
- UniProtKB/Swiss-Prot
- A6NJW1, D3YLG5, P35613, Q7Z796, Q8IZL7
- UniProtKB/TrEMBL
-
B4DNE1
- Related
- ENSP00000333769.3, ENST00000333511.9
- Conserved Domains (2) summary
-
- smart00409
Location:228 → 318
- IG; Immunoglobulin
- cd20940
Location:23 → 138
- Ig0_BSG1; Immunoglobulin-like Ig0 domain of basigin-1 (BSG1) and similar proteins
-
NM_198589.3 → NP_940991.1 basigin isoform 2 precursor
See identical proteins and their annotated locations for NP_940991.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1. Variants 2 and 5 both encode the same isoform (2).
- Source sequence(s)
-
AB085790, GU557064
- Consensus CDS
-
CCDS12034.1
- UniProtKB/TrEMBL
- A0A7P0TA85, A0A7P0TB04, Q54A51
- Related
- ENSP00000343809.4, ENST00000353555.9
- Conserved Domains (1) summary
-
- smart00409
Location:112 → 202
- IG; Immunoglobulin
-
NM_198590.3 → NP_940992.1 basigin isoform 3
See identical proteins and their annotated locations for NP_940992.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
DA007913, GU557064
- Consensus CDS
-
CCDS58635.1
- UniProtKB/TrEMBL
-
A0A087WUV8
- Related
- ENSP00000473664.1, ENST00000545507.6
- Conserved Domains (2) summary
-
- smart00410
Location:19 → 109
- IG_like; Immunoglobulin like
- cd00096
Location:11 → 15
- Ig; Ig strand A [structural motif]
-
NM_198591.4 → NP_940993.2 basigin isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC009005, GU557065
- Consensus CDS
-
CCDS58635.1
- UniProtKB/TrEMBL
-
A0A087WUV8
- Related
- ENSP00000344707.4, ENST00000346916.9
- Conserved Domains (2) summary
-
- smart00410
Location:19 → 109
- IG_like; Immunoglobulin like
- cd00096
Location:11 → 15
- Ig; Ig strand A [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p14 Primary Assembly
- Range
-
571283..583493
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060943.1 Alternate T2T-CHM13v2.0
- Range
-
525174..537384
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054321844.1 → XP_054177819.1 basigin isoform X1
- UniProtKB/Swiss-Prot
- A6NJW1, D3YLG5, P35613, Q7Z796, Q8IZL7
- UniProtKB/TrEMBL
-
B4DNE1